A real nervous system, not a metaphor
Every connection in this thing was traced from electron microscope images of an actual male fruit fly. Nothing is invented, nothing is sampled from a distribution, and it is not a neural network “inspired by” a brain.
The wiring is the FlyEM male CNS v1.0 release — brain plus ventral nerve cord — from HHMI Janelia FlyEM, the Cambridge Connectomics Group and Google Research, under CC BY 4.0. The graph keeps the 165,122 traced neurons and the 10,228,000 neuron pairs joined by at least three synapses, and takes each connection’s sign from its predicted neurotransmitter. All five flies on this page run this same graph; each has its own mushroom-body weights.
- Dataset
- MaleCNS v1.0 (HHMI Janelia FlyEM, Cambridge Connectomics Group, Google Research), CC BY 4.0
- Neurons
- 165,122
- Connected pairs (≥ 3 synapses)
- 10,228,000
- Synapses in those pairs
- 101,915,785 (≈ 101.9 million)
- Excitatory pairs
- 6,268,194
- Inhibitory pairs
- 3,959,806
Neurotransmitter per neuron, as released
- Acetylcholine excites
- 103,718
- Glutamate inhibits
- 29,296
- GABA inhibits
- 22,055
- Histamine inhibits
- 5,910
- Unclear zero weight
- 3,100
- Unknown zero weight
- 502
- Dopamine zero weight
- 392
- Octopamine zero weight
- 101
- Serotonin zero weight
- 48
The neuron model
165,122 leaky integrate-and-fire units on the traced male CNS connectome. It runs off chain, on ordinary hardware, and its output is spike rates. Model after Shiu et al. 2024, Nature.
- Uniform synapses. Every synapse has the same strength, 0.275 mV, so a connection’s weight is its sign times its synapse count. Pairs with fewer than 3 synapses are dropped.
- Signs from a prediction. Acetylcholine excites; GABA, glutamate and histamine inhibit, glutamate everywhere, the cord included. Dopamine, octopamine, serotonin, unclear and unknown get zero weight, so there is no neuromodulation at all. No gap junctions.
- Identical neurons. One leaky integrate-and-fire parameter set for all 165,122: rest −52 mV, threshold −45 mV, reset −52 mV, membrane time constant 20 ms, refractory 2.2 ms, step 0.2 ms. Set by Shiu et al. 2024 for the FlyWire female brain.
- No delays, no adaptation, no synaptic decay. Shiu et al. 2024 list a 1.8 ms delay and a 5 ms synaptic decay in their methods; this simulator omits both.